Till now webmasters have to verify the ownership of their website(s) seperately for Google Webmasters Tools and Google Analytics. But this has been simplified recently by Google.
If you are already running the Google Analytics for your website, then you can verify the ownership of your website for Google Webmasters Tools account just by clicking the button.
But this option has a limitation and is available only with the newer asynchronous Analytics JavaScript, so if you haven't migrated yet, now is a great time.
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